# TanaT

> TanaT (Temporal ANalysis of Trajectories) is a Python library for temporal sequence analysis, focused on patient care pathways. It supports multi-sequence trajectories combining events, intervals, and states.
> [HTML documentation](https://tanat.gitlabpages.inria.fr/core/tanat)
> Version: 0.9.0

## Documentation Files

Documentation is available as plain text files optimized for LLMs:

- [Getting Started](https://tanat.gitlabpages.inria.fr/core/tanat/llms/getting-started.txt) (~2,175 tokens)
- [API Reference](https://tanat.gitlabpages.inria.fr/core/tanat/llms/reference.txt) (~11,628 tokens)
- [Examples](https://tanat.gitlabpages.inria.fr/core/tanat/llms/examples.txt) (~26,106 tokens)
- [Tutorials](https://tanat.gitlabpages.inria.fr/core/tanat/llms/tutorials.txt) (~31,618 tokens)
- [Community](https://tanat.gitlabpages.inria.fr/core/tanat/llms/community.txt) (~810 tokens)

- [All content combined](https://tanat.gitlabpages.inria.fr/core/tanat/llms-full.txt) (~72,337 tokens)

## Table of Contents

### Getting Started

- Installation
- Core Concepts
- First Steps

### Community

- Changelog
- Contributing
- Citing TanaT

### Examples

- Sequence container
- Trajectory Container
- Query criterion
- Static criterion
- Time criterion
- Pattern criterion
- Length criterion
- Rank criterion
- Hamming metric
- Create Custom Metric
- Dynamic Time Warping
- Edit Distance
- Longest Common Prefix
- Longest Common Subsequence
- Linear Pairwise Sequence Metric
- Soft Dynamic Time Warping
- Chi-Squared Distance
- Create Custom Metric
- Aggregation Trajectory Metric
- Create Custom Metric
- Hierarchical Clustering
- PAM Clustering
- CLARA Clustering
- Timeline Visualization
- Histogram Visualization
- Distribution Visualization
- Coxnet Survival Analysis
- Tree Survival Analysis

### Tutorials

- Sequence Simulation
- Trajectory Simulation
- Data Wrangling for Sequences
- Data Wrangling for Trajectories
- Illustration of TanaT on the MIMIC-IV dataset
- MOOC Sequence Analysis with TanaT
- Metadata Management
- Sequence Conversions

### Reference

- Alignment
- Criterion
- Manipulation
- Metadata
- Metrics